• Volume 18,Issue 5,2011 Table of Contents
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    • Identification and subcellular distribution of metallothionein from Tegillarca granosa

      2011, 18(5):955-964.

      Abstract (1306) HTML (0) PDF 601.43 K (657) Comment (0) Favorites

      Abstract:Metallothioneins (MTs) are low molecular weight, cysteine-rich, metal-binding proteins. MTs are thought to be involved in the cellular detoxification of metals (e.g., Cd and Hg) and homeostasis of essential metal ions (e.g., Zn and Cu) in mammals. However, little is known about the functions of MT in bivalveTegillarca granosa () using RT-PCR. The open reading frame (ORF) of TgMT was 234 bp encoding a polypeptide of 77 amino acids with a predicted molecular mass of 7.9 kD. Phylogenetic analysis suggested that TgMT was most closely related to MT from . We constructed a recombinant expression plasmid (pET32a-MT) by inserting the TgMT ORF into the prokaryotic expression vector pET-32a. The recombinant TgMT was successfully expressed in BL21 (DE3) following induction with IPTG. SDS-PAGE analysis confirmed the expression of TgMT, which had a molecular mass of about 28.3 kD, in agreement with the expected molecular weight. The recombinant protein was primarily expressed as a soluble protein and was purified by Ni-NTA His-Bind Resin. We injected the purified TgMT into rabbits to obtain polyclonal antiserum against TgMT for use in immunoblotting experiments. Real time PCR and western blot analysis revealed that TgMT was distributed ubiquitously in a range of tissues. Expression was highest in the digestive glands of . We performed immunohistochemistry using a laser confocal microscope to examine the cell distribution of TgMT in the digestive gland. TgMT was primarily localized in the cytoplast of the digestive tubule epithelium. Our results provide insight into the utility of using MT proteins for environmental monitoring and into the mechanisms controlling detoxification in

    • Correlation analysis between microsatellite markers and body-shape traits in Cyprinus carpio L.

      2011, 18(5):965-982.

      Abstract (1080) HTML (0) PDF 447.22 K (699) Comment (0) Favorites

      Abstract:L.) are highly valued, both commercially and socially, throughout the world. The traits associated with economic value are primarily quantitatively controlled by polygenes. Thus, screening of the genes and markers that control quantitative traits has a significant practical value. We evaluated the association between microsatellite markers and body-shape traits such as body length, height, thickness, head length, genomic DNA of 192 low back common carp using fluorescent dye-labeled universal M13 primers. has the advantage of being simple, reliable, and allowing high-throughput microsatellite genotyping. This is particularly useful for research groups that perform high-throughput genetic linkage analysis with a high number of microsatellite markers., CAFS2321, andHLJE310 were associated with body height.CAFS2137, CAFS100, had a significant association with head length. CAFS1491, had a significant correlation to caudal peduncle length. and were significantly correlated to caudal peduncle height. Our results also suggest that some of the genotypes at each locus are positively correlated with body-shape traits. Genotype AA at locus were both positively correlated with body length traits, genotype AB at locus were positively correlated with body height traits. Conversely, genotype AB at locus and genotype AA at locus were negatively correlated with body length traits. The positively correlated genotypes at each locus represent molecular markers that can be used to assist breeding selection whereas negatively correlated genotypes should be eliminated through selection. Our results provide valuable insight into carp molecular marker assistant breeding selection.

    • Cloning and expression of the metalloprotein (MPII) gene from polychaetes Perinereis aibuhitensis (Annelida: Polychaeta)

      2011, 18(5):983-991.

      Abstract (1235) HTML (0) PDF 721.86 K (597) Comment (0) Favorites

      Abstract:, by reverse transcription polymerase chain reaction with the primers designed based upon the homologous cDNA sequence of Other primers were designed according to the partial sequence of two fragmentswere obtained using 3RACEand sequenced. Sequence analysis revealed a 904 bp cDNA containing an 81 bp 5untranslated regions, and 357 bp open reading frame putatively encoding a protein of 119 amino acids. The deduced amino acid sequence of MPwas subjected to BLAST search for similarity with published sequences and it was found that MPII shared high identity (81.51%) with Nereis diversicolor (77.12%), and with the hemerythrin of 3EX16HX3HX23/28HX4D) of the hemerythrin familyPerinereis aibuhitensis for 12, 24, 48, and 72 h using quantitative PCR. The expression levels of 2+. The current study showed that the expression levels of the <0.01) than control group at 40 mg/L Cd2+ after 72 h. The level of mRNA produced in the muscle tissue of sandworm increased significantly following exposure to 5, 10, and 20 mg/L <0.05). Therefore, the expression level of the 2+. We suggest that heavy metal Cd2+ is associated with the induction of expression, and the present study provided molecular support for the assessment of early ecological risks for monitoring the marine sediment environment based on the health of clamworm.

    • Association of polymorphism detection of SNPs in exon 7 of pepsinogen (PEP) and feeding behavior domestication in Siniperca chuatsi

      2011, 18(5):992-999.

      Abstract (1085) HTML (0) PDF 394.90 K (619) Comment (0) Favorites

      Abstract:refuse to eat dead prey or man-made feed. However, experiments with long-term cultivation suggest that can be domesticated to feed on inert baits. Selective breeding of using molecular markers and mass cultivation with artificial feed reduces the problems associated with cost, contamination, and disease. Pepsinogen is an acid gaster-digestion hydrolase which digests proteins under acidic conditions. Acidic proleases are sometimes used as additives in animal feed as they promote digestion and absorption of nutrients in fish. In order to search the distribution of the alleles and genotypes of pepsin gene () gene between domesticated and undomesticated populations, we identified SNPs in introns 5, 6, 7, and 8 and exons 6, 7, and 8 of the using DS, PCR-RFLP, and CRS-PCR. Two SNP sites (T1C, C52T) was identified in exon 7 of the gene, both of which were synonymous mutations. There was not significant difference in the occurrence of the SNPs between domesticated and undomesticated populations (>0.05). Five diplotypes were constructed based on two SNPs in the experimental population. There was a significant association between diplotype1 and diplotype5 in the two populations (<0.05). Our results provide a foundation for marker assisted selective breeding. The gene offers considerable potential as a candidate marker for the domesticated feeding phenotype in

    • Molecular cloning of propiomelanocortin cDNA and multi-tissue mRNA expression in Parasilurus asotus

      2011, 18(5):1000-1010.

      Abstract (896) HTML (0) PDF 748.13 K (702) Comment (0) Favorites

      Abstract:) cDNA using RT-PCR and RACE. The cDNA was 1 099 bp in length and contained a 129 bp 5′UTR, a 322 bp 3′UTR, and a 648 bp open reading frame encoding a protein of 215 amino acids. The catfish POMC protein contained a signal peptide (SP, Met1-Ala28), an N-terminal peptide (Gln29- Asp102), adrenocorticotropic hormone (ACTH, Ser105-Met144), 117), corticotropin-like intermediate lobe peptide (CLIP, Arg123–Met144), β-MSH (Asp161-Ser177), and ). Catfish POMC protein does not contain a γ-LPH were deleted. The protein shared the highest similarity (88%) with channel catfish (α-MSH, followed by-MSH, joining peptide (-LPH were located in the most divergent region. The protein had a calculated molecular weight of 24.66 kD, a theoretical isoelectric point of 7.25, was hydrophilic in most regions, and was rich in B cell antigenicity positions. Catfish mRNA was primarily expressed in the pituitary and the concentration of mRNA was much higher in brain than in other tissues.

    • Genetic analysis of grass carp populations from three major watersheds based on 26 microsatellite markers

      2011, 18(5):1011-1020.

      Abstract (1264) HTML (0) PDF 399.29 K (611) Comment (0) Favorites

      Abstract:are economically important in China, though wild populations have been in serious decline throughout the region. We used microsatellite markers to evaluate the genetic diversity amongst grass carp from four populations in three watersheds (Yangtze River, Pearl River, and Heilongjiang River). We selected 26 microsatellite markers and calculated heterozygosity, polymorphism information content (PIC), valid allele number, allele frequency, genetic distance, genetic similarity coefficient, and Hardy-Weinberg balance deflection index. There was a high degree of polymorphism within the markers in all three watersheds. The mean polymorphism information content (PIC) ranged from 0.581 3 to 0.638 6. Each microsatellite locus had 11 alleles (mean: 5.46). We identified a total of 154 alleles from all four populations, with a mean number of valid alleles of 3.455 6. The heterozygosity was between 0.711 4 and AMOVA analysis across all populations and loci suggested that there was low level of divergence amongst the four populations (=0.031 73). The Jianli population and the Hanjiang population were grouped in one cluster, which was clustered with the Pearl River population. The Heilongjiang population was grouped in a separated cluster. Our results suggest that there is a high level of genetic diversity among grass carp from the three watersheds, and no obvious differentiation. Our results may be used to better manage the fishery for conservation of locally adapted populations.

    • Molecular cloning and primary functional analysis of seahorse (Hippocampus kuda)  transforming growth factor-β1 (TGF-β1) gene

      2011, 18(5):1021-1031.

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      Abstract:the immune system, the mature TGF-β1 peptide is a potent differentiation modulator and immunomodulator, with the ability to down-regulate the expression of many cytokinesTGF-β1 from seahorse () using homology cloning approach combined with RACE method. The full length 1 941 bp, which contains an ORF of 1 161 bp, encoding a 386 amino acid protein. Homology analysis showed that the seahorseTGF-β1 had the closest relationship with the TGF-β1 of the Epinephelus coioides)mRNA was found in the kidney, followed by the liver, cerebrum, cerebellum, skin, midbrain, ovary, and the expression level were low in the gill and intestine, while no expression was detected in the heart and muscle. Recombinant seahorse Quick Coupled Transcription/Translation Systems, then cross-linked using bis (sulfosuccinimidyl) subetate (BS3) and formed rTGF-β1. Western-blot test results showed that the recombinant protein has a good immunological activityThe acquired rTGF-β1 protein was used to stimulate HeLa cells. Expression level of Smad signaling pathway downstream genes showed Smad3, Smad4 were markedly expressed, Smad7 was weakly expressed. is conserved as other TGF-β1 has a specific biological activity which can induce the activation of Smad signaling pathway in human cells.

    • Microsatellite-based genetic diversity of 2×2 full diallel cross of Jian carp and Huanghe carp and related bodyweight correlation

      2011, 18(5):1032-1042.

      Abstract (1009) HTML (0) PDF 410.73 K (710) Comment (0) Favorites

      Abstract:The objective of this study was to investigate the relationship between diversity of microsatellite loci with common carp cross F1. 25 microsatellite loci were used to analyze the genetic diversity of 2×2 full diallel cross of common carp() population and body weight variation among different genotypes. The result showed that the number of alleles ranged from 5.08 to 6.08. Effective numbers of alleles ranged from 1.4 PIC were from 0.42 to 0.49. The average expected heterozygosity value was ranged from 0.47 to 0.55. The highest genetic similarity index that came from the populations of Hh and Hj was 0.9795. The UPG MA trees based on genetic distance demonstrated that Huanghe carp was geneticallynear to Huanghe carp ♂×Jian carp♀. The association between these microsatellite loci and body weight was analyzed by least square linear model. The results showed that were detected between different genotypes of purebred carps on the HLJ13 locus. Compared to this, this difference the most favorable one, while the Hj and JH combinations had higher body weight than that of their parents’ pure breds. The study provis the foundation for molecular assistant selection of common carp in the future.

    • Progesterone receptor immunoreactivities in Bostrichthys sinensis (Lacépède) olfactory system

      2011, 18(5):1043-1050.

      Abstract (925) HTML (0) PDF 416.40 K (702) Comment (0) Favorites

      Abstract:We evaluated the morphology and structure of the olfactory system in the Chinese black sleeper, (Lacepede) using histology. The olfactory system consisted of the olfactory sac, olfactory nerve, and olfactory bulb. The olfactory sac (the rosette) was fusiform in shape and located inside the olfactory chamber, which had two openings that allow water to flow through the rosette as the fish moves. There were 10–16 primary olfactory lamellae radiating from the wall of the olfactory chamber. These lamellae were longitudinally arranged and parallel to each other. The primary olfactory lamellae differed in their height and some possessed secondary olfactory lamellae. Olfactory lamellae were composed of the olfactory epithelium and central core. The olfactory epithelium consisted primarily of ciliated receptor cells, ciliated non-receptor cells, supporting cells, and basal cells. The axons of the primary olfactory receptor neurons in each rosette converged to form a pair olfactory nerves that exceeded 1 cm in length in a 17 cm fish. The paired olfactory nerves extended from the posterior ventral base of each rosette to the ipsilateral olfactory bulb. The two olfactory bulbs, in close contact with the telencephalon, were slightly oval and sessile. Each olfactory bulb consisted of three, roughly distinguishable layers, in order from the surface: (1) the olfactory nerve layer, containing the axons of the olfactory receptor neurons, (2) the glomerular and mitral cell layer, where the axons of the olfactory receptor neurons arborized into glomeruli and the secondary neurons (mitral cells) were scattered around glomeruli, and (3) the granule cell layer, consisting of densely-packed small size cells. Afferent fibers of nerve bundles reached the anterior bulb, spread along the periphery of the bulb and terminated on the dendrites of mitral cells in the glomerular and mitral cell layer. The olfactory nerve layer extended more caudally in the ventral lateral field than in the dorsal medial field. The glomerular and mitral cell layer was thinner in the medial field than in the lateral field of the olfactory bulbs. receptors were present in the olfactory system of the fish, with the largest number of PR occurring in the olfactory epithelium, followed by the olfactory bulb and the olfactory nerve. PR immunoreactivity was confined to the cell nucleus in the olfactory epithelium. We only observed a few neurons that were immunostained with antibodies against PR in the olfactory nerve in mature fish. In addition, we noted the presence of some PR immunoreactive cells on the vascular wall during the spawning season. We observed a higher density of PR immunoreactive cells in the olfactory bulb. The immunoreactive intensity in the bulb was higher in the lateral field and ventral fields than in the mid and dorsal fields, respectively. In the sections that were immunostained with antibodies against PR, we observed immunoreactive mitral cells in the glomerular and mitral cell layers. The numbers of were linked to the reproductive status of the fish.of immunoreactive cells in mature males and females was significantly higher than in immature males and females. Similarly, immunoreactive cells were not detected in the olfactory nerve in immature fish. Tn the was significantly higher in mature females than in immature females. To our knowledge, this is the first report documenting the distribution of.

    • Morphological and histological observation of the digestive system in Sinilabeo decorus tungting (Nichols)

      2011, 18(5):1051-1060.

      Abstract (1174) HTML (0) PDF 671.44 K (670) Comment (0) Favorites

      Abstract:(Nichols) is indigenous to Hunan province, China. This species is currently listed as endangered however little is known about its biology. To address this, we in captivity and used the offspring to document the morphology of the digestive system by light microscopy observation of tissue sections. The digestive system consisted of the digestive tract, which was composed of mouth, pharynx, esophagus, and intestine, and stomach, 2 pairs of barbels, 5 types of pharyngeal teeth (typically 5•4•2/2•4•5), and 42–55+ 45–66 lateral line scales. The intestine was extremely and twisted 42±5 times. The ratio of intestine length to body length was 21.42±3.51, and that of hepatopancreas weight to total weight was 1.21±0.15.scratches food with its lip. , submucosa, serosa layersThe thickness of each layer differed among the segments of the digestive system. The thickness of the submucosa differed significantly between the foregut, midgut, and hindgut (<0.01). Similarly, the thickness of the longitudinal muscle differed between the foregut, midgut, and hindgut (<0.05). The submucosa and circular muscle were thicker in the e Similarly, the mucosal and submucosal thickness was greater in the plica than in the hindgut. 44±6 wrinkles, and the number of wrinkles decreased from the foregut to the hindgut. ). The density of mucous cells was higher in the plica of the prepharynx than in the goblet cells of the intestine, and higher in the foregut than in the hindgut. The density of mucous cells differed between the plica in different regions of the gut and decreased from the base to the head of the plica in the esophagus and hindgut. Similarly, the density of mucous cells differed between the plica of the foregut, midgut, and hindgut. The density in the head of the plica tended to decrease between the foregut and hindgut. Food was absorbed in both the esophagus and the intestine a long and high density of mucous cells.

    • Microstructural and ultrastructural study of pituitary in highfin grouper Cromileptes altivelis

      2011, 18(5):1061-1068.

      Abstract (1035) HTML (0) PDF 1.03 M (679) Comment (0) Favorites

      Abstract:Pituitary was one of most complicated endocrine gland, the function of it was diversification. Pituitary could modulate the activities of the body organs and tissues. It was necessary to investigate structure of fish pituitary in order to provide the basis for histological morphology, reproductive biology and pathology. Using improved staining, Mallory and PAS staining method, and transmission electron microscopy technique, the microstructure and the ultrastructure of the pituitary ofResults showed that: the pituitary of the was a solid spherical glands, and was composed of neurohypophysis and adenohypophysis. According to the shape and size of excretive granule contained in nerve fibers, the neurosecretory fibers could be differentiated into A1, A2 and B-type. Two types of pituitary cells could be observed in the neurohypophysis, consistsed of three parts: , proximal pars distalis(PPD) and pars intermedia(PI). It could be identified endocrine cells in a. Adrenocorticotrophic (ATCH) cells and prolactin (PRL) cells existed in the RPD, growth hormone (GH) cells, thyrotrophs (TSH) cells and gonadotrophic hormone (GTH) cells could be found in the PPD, only one endocrine cell were observed, it was melanophore-stimulating hormone (MSH) cells. And one non-secretory cell type-stellate cells (SC) could also be seen in a. The sort of gonadotrophic hormone cells and endocrine cell were discussed significantly expanded, foam based, and it relatively had a few secretory granules in the cytoplasm. Since the release of secretion of some GTH , nuclear was smaller, degenerate, or even disassemble, and secretory granules was preternaturally rich in the cytoplasm. There also had many GTH that were not found vacuole, and the edge of cell showed lace-shaped or notch, mitochondria well-developed.

    • reproduction of spores/gametes of floating green tide algae Ulva prolifera

      2011, 18(5):1069-1076.

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      Abstract:Green-tide blooms have occurred during each of four years since 2007 in the Yellow Sea of China. Each of the blooms was characterized by a rapid expansion in the area covered by green macroalgae, which caused a series of environmental problems associated with eutrophication. We investigated the biology of the dominant floating macroalgae in these blooms. Our observations suggest that the gametophytes are the primary survival form. Each single blade of the algae thallus is able to produce 2.84×10. Furthermore, of the zoids that are released, about 91.6%–96.4% are able to successfully germinate, forming new plants. Thus, one third per unit weight of the algal thallus is able to produce 0.84×10new individuals during the peak-hour of a bloom. Our results demonstrate that is able to reproduce very rapidly, which is likely a major factor in the spread of green tide blooms in the coastal areas of China.

    • Isolation and identification of grass carp reovirus strain JX-0902

      2011, 18(5):1077-1083.

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      Abstract:We identified a new strain of reovirus in grass carp from Nanchang city, Jiangxi Province. We collectedexhibiting typical hemorrhage symptoms from Nanchang city and observed large numbers of viral cells in ultra-thin sections of the spleen and kidney. The virus had a non-enveloped structure with a diameter of approximately 70 nm, very similar to the characteristics of the grass carp reovirus (GCRV). We isolated samples of the virus by homogenizing the tissue, centrifuging the homogenate, then conducting sterilizing filtration. We were able to replicate the hemorrhaging by artificially infecting grass carp with the purified sample. Artificial infection of grass carp kidney cell line (CIK) revealed no obvious cytopathic effects (CPE) after six passages. However, observations under the electron microscope revealed that the virus was propagated in the cytoplasm, and had the same shape as observed in the tissue sections. The newly isolated virus (temporarily named GCRV JX-0902) consisted of 11 segments of dsRNA, a typical characteristic of aquareovirus. There were significant differences in the genome banding pattern of GCRV873 and JX-0902, but no difference between HZ08 and JX-0902. We designed PCR primers based on sequence segment 6 (GQ896337) of GCRV in GenBank to amplify specific bands using JX-0902 cDNA as the template. The amino acid sequence of JX-0902 S6 had 98% and 99% identity with GCRV-HZ08 and GD108, respectively. Thus, we conclude that the new isolate is a member of the genus of aquareovirus.

    • Cell surface hydrophobicity and biofilm formation ability of Vibrio splendidus

      2011, 18(5):1084-1091.

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      Abstract:infects a range of hosts, including fish, shellfish, and echinoderms. Infection with this pathogen has led to significant economic loss in several cultured species, including the sea cucumber (). Thus, there is an urgent need to understand the pathogenesis of . The virulence of a pathogen is partly a function of its adhesion properties. Adhesion depends on cell surface hydrophobicity and biofilm formation. The hydrophobic cell surface provides an advantage to the bacteria by increasing resistance to phagocytosis or by favoring colonization of mucosal or connective tissue in wounds and endocarditis in bacteria. We evaluated the hydrophobicity and biofilm formation in . We also evaluated the effect of culture constituents, culture time, growth medium, and the concentration of glucose on biofilm formation. We compared the sensitivity of planktonic cells and resuspended AP622 biofilm cells to gentamycin sulphate. Last, we quantified the motility of the flagellum and measured pill and cell surface hydrophobicity using tests for salt-aggregation (SAT) and microbial adherence to hydrocarbons (MATH). AP622 possesses a high ability to form a biofilm. The biofilm formation cycle was 24 h in length and the optimal formation conditions consisted of polyvinyl chloride (PVC) and LB medium with 0.5% glucose. Swarming and twitching motilities played an important role in biofilm formation. The resistance of resuspended biofilm bacteria to antibiotics was significantly higher than intimes higher than in planktonic bacteria. exhibiting strong hydrophobicity, could agglutinate at a concentration of 0.6 mol/L ammonium persulfate, and the adhesion partition to liquid hydrocarbons was >50%. In conclusion, the hydrophobicity and biofilm formation properties suggest that AP622 has strong adhesion properties. Resistance to antibiotics as a result of biofilm formation will reduce the effectiveness of treatments in aquaculture facilities. Thus, cell surface hydrophobicity and biofilm formation play an important role in the pathogenesis of .

    • ERIC-PCR genotyping and drug resistant of pathogenic Aeromonas hydrophila from freshwater animals

      2011, 18(5):1092-1099.

      Abstract (1479) HTML (0) PDF 580.26 K (571) Comment (0) Favorites

      Abstract:The freshwater aquiculture industry has developed rapidly in China. As a result, China has become the largest producer of freshwater cultured fish in the world. , a widely distributed freshwater bacterial pathogen that is thought to cause disease in a range of aquatic animals. For example, is thought to cause bacterial septicemia in fish and red abdominal shell diseases in soft-shelled have resulted in significant economic losses to the aquaculture industry. In addition, is a zoonotic pathogen, sometimes causing gastroenteritis and septicemia in humans. Our objective was to document the epidemiological characteristics of pathogenic to provide insight into potential measures to prevent and control infections. We genotyped pathogenic strains collected from a variety of sources, determined their drug susceptibility, and evaluated the relationship between genotype and antimicrobial resistance patterns. We used collected and Guangdong.is a more rapid, efficient, andmolecular typing method than the traditional serotyping methods. In addition, we evaluated the susceptibility of each isolate to 12 antibacterial drugs and determined the relationship between the genotype and the antimicrobial resistance pattern. XII) from the 50 isolates. Among these, genotype VII was the dominant genotype, consisting of 14 strains, whereas genotype III and X contained only one strain. All strains were resistant to ampicillin and 98% of the strains were resistant to cefalexin. However, >94% of the strains were susceptible to aminoglycosides and quinolones. We identified 9 patterns of drug-resistance: AMP, CX/AMP, CX/AMP/POL, CX/AMP/SMZ, CX/AMP/NM, CX/AMP/SMZ/POL, CX/AMP/SMZ/POL/GM, CX/AMP/ SMZ/LOM/ENR, and CX/AMP/SMZ/LOM/ENR/OF/LEV. The twelve strain genotypes shared a common pattern of drug resistance (CX/AMP/POL). Similarly, the majority of genotypes within strain II and XI shared a common pattern ofdrugresistance (CX/AMP/SMZ). The drug-resistant pattern of most genotypes within strains IV, VI, and VIII was CX/AMP and for strain X the pattern was CX/AMP/NM. Thus, our results suggest that there is likely a correlation between the genotype and drug-resistance among strains.

    • Acetyl-coenzyme A synthetase gene and its upstream promoter in the bacterial pathogen Flavobacterium columnare

      2011, 18(5):1100-1107.

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      Abstract:, the etiological agent of columnaris disease, is one of the most important bacterial pathogens of freshwater fish in the world. However, suitable genetic manipulation of this bacterium which has been challenging and producing genetic mutations in this bacterium has not been reported. Therefore, isolation of an effective promoter in may provide tools for the development of a genetic manipulation system in the bacterium. In this study,) and flanking sequences were analyzed to determine promoter function. The gene is 2 323 bp long, encoding a protein of 635 amino acids. A TAAAA motif was identified as the conserved sequence for ribosome binding site (RBS) and TATTTTCG and TTG were determined to be –7 and –33 promoter motifs, upstream of the upstream regulation sequence () gene and was introduced into strain, the host cells gained ) resistance. was both determined to be T locating 46 bp upstream of the start codon. Deletion analysis of the promoter showed that at least 164 bp nucleotides upstream of the start codon were required for promoter activity and for the expression of CAT. Nucleotide analysis and alignment of the putative RBS for 32 protein-coding genes in conserved RBS consensus, TAAAA, in. The current study described the first successful construction of a plasmid that was able to express cloned genes in , which will allow further studies of the important columnaris disease in fish.

    • Physiological and biochemical responses of Spirulina platensis to short-term enhanced UV-B radiation

      2011, 18(5):1108-1114.

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      Abstract:The amount of UV-B radiation reaching the earth’s surface is increasing due to attenuation of the stratospheric ozone. Although the release of ozone-depleting material has declined significantly in the past decade, there is a considerable lag in the recovery of the ozone layer.Cyanobacteria are the oldest photosynthetic prokaryotes and play an important role in the aquatic ecosystem. UV-B can penetrate water to a depth sufficient to disrupt aquatic ecosystems. For example, the depth of water required to remove 90% of the solar radiation at 310 nm is about 20 m in the clearest ocean. Thus, a large number of cyanobacteria populate aquatic habitats that are exposed to UV-B radiation. UV-B radiation is known to affect cyanobacteria biomass by disrupting physiological and biochemical processes. have developed mechanisms to counteract the damaging effects of UV-B, including production of UV-screening pigments [(e.g., mycosporine-like amino acids (MAAs)] and downward migration. We evaluated the effects of short-term enhanced UV-B radiation onS. platensis were exposed to 240 UV-B for 3.5 h. By compared with untreated cyanobacteria cells, exposure to increased levels of UV-B radiation was associated with a reduction in chlorophyll a, carotenoid and phycobiliprotein Our results suggest that increased levels of UV-B radiation causes bleaching of the photosynthetic pigment. Exposure to higher levels of UV-B was also associated with increased synthesis of MAAs and accumulation of proline. We hypothesize that this is a mitigation strategy to reduce the damaging effects of UV-B.

    • Effects of dietary nucleotides on growth performance, intestinal morphology and anti-oxidative activities of juvenile Litopenaeus vannamei

      2011, 18(5):1115-1124.

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      Abstract:There has been extensive research into the role of nucleotides and their related metabolic products in aquatic feeds. Nucleotides and metabolites play key roles in many biological processes and are considered conditionally essential nutrients. During periods of rapid growth or certain disease states, dietary nucleotides may spare the cost of de novo nucleotides synthesis and optimize the function of rapidly dividing tissues, such as those in the gastrointestinal and immune systems. Research on dietary nucleotides in aquatic animals has illustrated that they may improve diet palatability, enhance growth in early stages of development, and maintain intestinal and liver health, as well as increase immunity and disease resistance. Despite their apparent importance, little is known about the benefits of supplementary nucleotides in . We evaluated the effects of dietary nucleotides on growth, body composition, midgut morphology, and anti-oxidant activity in the hepatopancreas and serum in juvenile . We randomly assigned 960 shrimp (mean body weight: 1.01 g±0.02 g) into 8 triplicate groups. Group G0 (control) was fed a base diet and the remaining seven groups (G0.1, G0.2, G0.4, G0.6, G0.8, G1.0, and G1.2) were fed the base diet supplemented with 0.1, 0.2, 0.4, 0.6, 0.8, 1.0, or 1.2 g/kg, respectively, of a nucleotide mixture containing adenosine-5′-monophosphate (AMP), cytidine-5′-monophosphate (CMP), uridine-5′- monophosphate disodium salt (UMP), inosine-5′-monophosphate disodium salt (IMP), and guanosine-5′-monophosphate disodium salt (GMP) (1 : 1 : 1 : 1 : 1 , mix-NT). All groups were fed their respective diets three times a day (8:00, 15:00, and 20:00) at the same fixed rate, which ranged from 4% to 6% of body weight, for 7 weeks. Specific growth rate (SGR) and survival (SR) tended to increase as the concentration of the dietary mix-NT increased, peaking in the group supplemented with 0.6 g/kg, though the differences among the groups were not significant (>0.05). The feed conversion rate (FCR) was lower in the treatment groups than in the control group, but not significantly (>0.05). The whole body moisture content was significantly affected by the level of dietary mix-NT supplementation (<0.05), but there were no significant differences in the content of crude protein, ether extract, or ash (>0.05). The dietary mix-NT had a significant effect on the hepatosomatic index (HSI) in the group supplemented with 0.6 g/kg (<0.05). Glutamic-oxaloacetic transaminease (GOT), glutamic-pyruvic transaminase (GPT), and uric acid (UA) content were significantly lower in shrimp fed 0.4 g/kg mix-NT (>0.05). There was a significant increase in the midgut jejunum wall thickness in shrimp fed 0.1–0.8 g/kg mix-NT, but there no significant difference in villus height of all groups. Alkaline phosphatase (AKP) activity and total antioxidant capacity (T-AOC) in the hepatopancreas tended to increase as the level of supplementation with dietary mix-NT increased, and were significantly higher in groups G0.2 and G0.4, respectively, than in the control (<0.05). Adding mix-NT had no significant effect on serum alkaline phosphatase (AKP) and superoxide dismutase (SOD) activity (>0.05). In conclusion, supplementing the diet with a mixture of 5 nucleotides improves hepatopancreas function, maintains intestinal morphology, and enhances anti-oxidant activity in the hepatopancreas of juvenile . It would be interesting to determine the effects of nucleotide supplementation on immune function, particularly with respect to white spot syndrome virus (WSSV).

    • Effects of di-n-butyl phthalate (DBP) on activity of enzyms in different tissues of crimson snapper (Lutjanus erythropterus)

      2011, 18(5):1125-1131.

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      Abstract:PAE) family, is thought to have an endocrine disrupting effect on vertebrates and humans and has been identified as priority controlled hazardous substance in the United States and China. In order to evaluate the effect of DPB, we examined liver and gill levels of superoxide dismutase (SOD) and malondialdehyde (MDA), and brain levels of crimson snapper (DBP for respectively. The safe concentration (SC) of DBP was 2.04Gill superoxide dismutase (SOD) activity increased significantly as the concentration of DBP increased. In contrast, there was no clear pattern of induction or inhibition for liver SOD activity, though levels in the groups exposed to 0.5 were significantly different from the control ( was significantly higher after 6 h, but decreased thereafter. Similarly, increased then decreased, and. Brain levels of were 32.07%, 62.07%, and 61.60% higher in fish exposed to 0.125, , activity was lower in the treatment groups than in the control group after 96 h exposure (DBP on . It could be concluded that DBP causes oxidative stress and neurotoxicity in aquatic organisms. Thus, attention should be given to the potential ecological risk posed by this contaminant.

    • Feeding ecology of Harpadon nehereus in areas adjacent to Changjiang River estuary

      2011, 18(5):1132-1140.

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      Abstract:a benthic dwelling fish distributing throughout the Indian Ocean and Western Pacific,plays an important role in marine ecosystems. Despite its abundance and importance to fisheries, little is known about the biology of this species. We evaluated ontogenetic and diet variation in the feeding ecology of in the areas adjacent to the Changjiang River Estuary. We collected a total of 450 individuals ranging in size from 64 standard length (SL) during monthly surveys in the south Yellow Sea and the north East China Sea between September 2009 and August 2010. Based on stomach content analysis, was a generalist. We identified 39 prey species, of which other fish were the most abundant, accounting for 84.13% of the total food by weight. At the species level, the primary prey were Apogonichthys lineatus,The feeding intensity, as indicated by the percentage of empty stomachs and the mean stomach fullness index, varied significantly among seasons. Feeding activity was the highest in autumn and lowest in winter. There were significant seasonal differences in the diet of Decapods were more important in spring, whereas fish were more important during other seasons. Both the feeding intensity and diet composition varied significantly among different size classes. There were two abrupt changes in diet composition at about 100 and 250 mm SL, the latter characterized by a switch from euryphagy to stenophagy. The trophic level of was 3.80, suggesting that this species was a high level predator within the food web in the Yellow Sea and East China Sea.

    • Spatial variation in fish community of Yangtze River estuary in spring

      2011, 18(5):1141-1151.

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      Abstract:studing the effect and mechanism of variability of habitat factors on important biological resources in the Yangtze River estuary (YRE), we evaluated the relationship between fish community structure and environmental factors in the YRE. We collected fish by bottom trawling and obtained environmental data from 30 stations in the YRE in May and June 2010. In addition, we used historical data to analyze the effect of large hydraulic projects on fish community dynamics in the YRE. We collected a total of 40 fish species belonging to 23 families and 12 formers. The Engraulidae and Gobiidae families were the most abundant (5 species each), followed by Sciaenidae (4 species), and Cynoglossidae (3 species). The trawl catches were dominated by young-of- year juveniles. The most abundant species (94.11% of the total catch) by life history type were (marine migrant), (anadromous). Cluster and non-metric multidimension scaling analysis revealed significant spatial variation in the fish community. Of the nine environmental variables we measured, water depth, bottom salinity, and surface salinity were the most significant factors influencing fish species richness and density in the inner zone. Conversely, the fish community in the outer zone was primarily influenced by the bottom pH, surface salinity, and bottom temperature. The number of fish species declined compared to historical catches in May (69 species, 1.72×104 ind/km2)and June (62 species, 2.29×104 ind/km2) in 1985, though fish density (5.2×104 ind/km2) increased. Our results indicate the YRE has still been the spawming and nursery ground for commercial species, but fish community structure has varied.

    • Community structure and diversity of invertebrates in northern region of China Sea

      2011, 18(5):1152-1160.

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      Abstract:We evaluated the community structure and diversity of invertebrates in the northern region of China Sea using data collected from bottom trawl surveys in May and August 2010. We collected a total of 32 invertebrate species, including 15 species of shrimp, 10 species of crab, and 7 species of squid. Shrimps were dominant in Bohai Sea, accounting for 86.57% of the biomass and 96.55% of individuals in May and 46.16% of the biomass and 80.85% of individuals in August. In contrast, the north region of the Yellow Sea was dominated by crabs in May (s). We quantified the ecological dominance of a species using an index of relative importance (IRI). The dominant species changed between seasons and regions. We calculated three diversity indexes to analyze the diversity of invertebrates: the species abundance index (), and the species evenness index (Bohai Sea than in the northern region of the Yellow sea. The Bray-Curtis , a measure of the similarity of the invertebrate community in the two regions, was 0.315 in May and 0.297 in August. The season transformation index (AI) and the transfer index (MI) suggested that some species migrated from Bohai Sea.

    • Measurement and analysis of sinking characteristics of tuna purse seine

      2011, 18(5):1161-1169.

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      Abstract:sinking depth and sinking speed of tuna purse seines. We attached a micro-temperature and depth recorder (10 TDR-2050) to a purse seine on the “JINHUI NO.6” vessel (Shanghai Pelagic Fishing Company) and collected data from 23 sets in the Western and Central Pacific Ocean (WCPO) between October and December 2006. The sinking depth did not achieve the theoretical maximum sinking depth, instead accounting for 51.4% of the maximum stretched height (311.1m) of the netting. The relationship between ) for the mid section of leadline can be described using the formula:+ =0.998 3). The sinking speed differed among the sections of the lead line. The fastest sinking speed was recorded at the back wing end, followed by the mid section and the bulk. The sinking speed decreased with depth, the deeper the sinking depth of leadline, the lower the sinking speed. Fluctuations in the confidence interval of the average sinking speed of leadline followed a pattern of large-small-large as the depth increased. The relationship between the sinking speed () at the mid part of leadline can be described using the formula: −4 = 0.986 7). Our observations provide insight into ways to improve sinking performance in tuna purse seines and a reference for fishing operations.

    • Numeric modeling of a pelagic longline based on minimum potential energy principle

      2011, 18(5):1170-1178.

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      Abstract:Fishing parameters (such as the shooting speed of mainline, vessel speed, time interval between two hooks, numbers of hooks between two floats) can be adjusted to deploy the hooks to water layers that are preferred by target species, such as tuna. As a result, the catch rate of the target species can be increased and the catch of bycatch species (e.g., loggerhead turtles, Carcharhinus falciformis) can be reduced. Together, these actions improve fishing efficiency and help maintain biological diversity. To better understand the relationship between these factors and the fishing depth of longline gear, we developed a numeric model of the behavior of a pelagic longline. We conducted surveys on board Chinese large scale tuna longliners in the Indian Ocean between September 2008 and January 2009. During the surveys, the vessels targeted bigeye tuna (), swordfish () and billfishes (Istiophoridae). The hook depths (188 hooks) were measured using temperature depth recorders (TDRs) and the three dimensional current was measured at a range of depth at 24 sites using an acoustic doppler current profiler (ADCP). We developed a three-dimensional numerical longline model (3DNLM) using finite element analysis and the minimum potential energy principle method. We used Matrix Laboratory (MATLAB) software to program and conduct the numerical calculations. The three dimensional current data were assigned to seven, 50 m depth intervals (e.g., 0100, or 300). The coordinates of all the nodes of the longline (including the float lines, mainline, and branch lines) were calculated by inputting three-dimensional current profile data, fishing gear parameters (the diameter of the mainline and branch line, the total weight of the branch line and the bait in the water, the elastic modulus of the mainline,the length of the branch line, and the length of the float rope), operating parameters (vessel speed, line shooter speed, and the time interval between two hooks) model. The model then outputs the shape of the longline under water and the depth of each hook. model was able to accurately depict the three-dimensional here was no significant difference between the hook depth=0.22>0.05). The average difference between two methods was 12.03 m (range: 0.02–40.36 m, =188)The shape was related to the force of the branch line. This load was concentrated at the respective node of the main line and made the depth of this node deeper. The main line between two nodes may have floated somewhat because of lift generated by sea currents, especially upwelling currents. shape and the hook depthsCN90 was defined as the drag coefficient associated with water flow plumb to the cylinder. The value of the drag coefficient () of the study object.

    • Cloning and identification of immune response related genes in common carp, Cyprinus carpio L.

      2011, 18(5):1179-1188.

      Abstract (903) HTML (0) PDF 454.75 K (595) Comment (0) Favorites

      Abstract:mRNA differential-display reverse-transcription polymerase chain reaction (DDRT-PCR) is an effective and quick method to study gene different expression in the same cell under different physiological status and different stages of growth and development. In order to study immune response related genes in carp leucocytes, fluorescence DDRT-PCR was used to compare mRNA from leucocytes from peripheral blood of carp with LPA (50µg/mL), ConA (50 µg/mL) and PHA (50 revealed 3 cDNA fragments were immune response related genes which encoded proteasome activator complex PA28) and matrix metalloproteinase 13 (Mmp-13) of common carp. Bioinformatics analysis showed that the genes encoded by these different fragments were involved in various functions such as MHC class I antigen, signal transduction, translational control, apoptosis, degradation of the extracellular matrix. It is essential for further studying the mechanisms of these differentially expressed genes in fish.

    • Annual development of testis and spermatogenesis in Urechis unicinctus

      2011, 18(5):1189-1195.

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      Abstract:We documented the histological structure and annual development of the testis and the process of spermatogenesis in using light microscopy and transmission electron microscopy. The testis was localized at the end of the body and formed a band. Each end of the testis was connected to the body wall and connective tissue and spermatogenic cells, including spermatogonia clusters at the periphery of the connective tissue and interior spermatocytes surrounded by connective tissue. Spermatocytes that were clustered at different stages were transported into the coelomic fluid and developed into sperm, which left the cell clusters and entered the nephridia. Based on the histological characteristics of the testis, we divided the annual development into 5 stages: mature, release, and restingstages. In addition, we observed spermatogenesis in the testis and coelom using both optical and electron microscopy and documented ultrastructural changes in the nucleolus, acrosome, and sperm tail.

    • Comparative analysis of variable and deletion regions of white spot syndrome virus genome among isolates in Jiangsu Province

      2011, 18(5):1196-1201.

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      Abstract:() in Jiangsu Province, China. We collected 83 crayfish during the period between July 2008 and June 2010. Of these, 42 were tested positive for WSSV using the loop-mediated isothermal amplification method (LAMP). Based on geographical and time considerations, we selected six positive samples for amplification of the variable and deletion regions of the WSSV genome. In addition, we used PCR amplification to clone and sequence these regions. We then conducted a pairwise and multiple alignment analysis to evaluate the degree of genetic divergence between different strains. The variable region was ~1 440 bp in length in most strains, except in isolate WSSV-XH(1 829 bp). The deletion region was 384 bp in length in six strains, and there was complete homology among the nucleotide sequences. We compared the isolate sequences to those in GenBank and found at least two distinct types of WSSV in Jiangsu Province. Given this, we hypothesize that the WSSV variable region and the deletion region may have evolved independently.

    • History, principles, and classification of integrated aquaculture in China

      2011, 18(5):1202-1209.

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      Abstract:Integrated aquaculture is defined as the polyculture of multiple aquatic species in a waters or culture of aquatic species within, or together with, the undertaking of other productive activities. Examples of the integrated culture of rice and fish have existed in China since 1800 B.C. More recently, large scale integrated mariculture was initiated in 1975. At present, there are several dozen types of integrated aquaculture in China that offer several ecological benefits, including waste reclamation through trophic relationship, maintenance of ecological balance by complementary or commensalisms of farmed species or production systems, optimization of resource use (time, space and food), and disease prevention. Integrated aquaculture can be divided into three forms: technical integration, species integration, and system integration, which consists of two sub-groups (integration of aquatic systems and integration of aquatic and land systems).

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