豹纹鳃棘鲈酪氨酸酶Tyr基因家族的结构特征及组织表达分析
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肖婕(1997–),女,硕士研究生,鱼类遗传育种.E-mail:xiaojie199792@163.com

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S961

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海南省重点研发计划项目(ZDYF2021 XDNY133); 三亚崖州湾科技城管理局项目(SKJC-KJ-2019 KY01, SKJC-2020-02-009)


Bioinformatics and expression analysis of Tyrosinase protein family genes in leopard coral grouper
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    摘要:

    酪氨酸酶蛋白家族(tyrosinase gene family)是一类调控黑色素合成的关键酶, 在黑色素细胞形成的过程中起着不可替代的作用, 然而 Tyr 基因家族在东星斑体色形成中的潜在机制尚不清楚。豹纹鳃棘鲈(Plectropomus leopardus)俗称东星斑, 是我国重要的热带经济养殖鱼类, 但是人工养殖的东星斑因环境等变化而逐渐出现体色变淡或者变黑的现象, 严重影响其品质和经济价值。本研究从东星斑全基因组中共筛选鉴定获得 5 个 Tyr 基因家族成员, 氨基酸序列比对结果显示不同物种间的同源基因保守性较高, 尤其是 Tyr 家族典型的酪氨酸酶功能域在不同物种各成员之间均具有高度保守性。系统发育和共线分析均显示东星斑 Tyr 基因家族进化过程中存在基因复制和丢失现象。此外, 荧光定量 PCR 结果表明 Tyr 基因家族所有成员在东星斑黑色个体的皮肤组织中表达量均显著高于红色个体(P<0.05)。本研究初步鉴定和分析了东星斑 Tyr 基因家族在其体色形成中的作用, 旨为深入解析东星斑酪氨酸蛋白酶基因家族的进化及功能机制提供依据。

    Abstract:

    The tyrosinase protein family contains key enzymes for regulating the synthesis of melanin, which plays an irreplaceable role in the formation of melanocytes. However, the underlying mechanism of the Tyr gene family in body-color formation is unclear in Plectropomus leopardus. P. leopardus is an economically important tropical fish in China. The body color of farmed P. leopardus has different degrees of degradation, which seriously affects its quality and market price. In this study, a total of five Tyr genes were identified from the whole genome of P. leopardus, and amino acid sequence alignment showed that Tyr family proteins in P. leopardus were highly conserved in relation to homologous proteins of other species, especially the typical tyrosinase functional domain of this family. The phylogenetic and comparative synteny indicated the gain and loss of Tyr genes after teleost-specific whole-genome duplication (3R-WGD). In addition, the results of qRT-PCR showed that the expression levels of all members of Tyr genes in the skin tissues of black individuals were significantly higher than those of red individuals (P<0.05). This paper preliminarily identified and analyzed the role of the Tyr gene family in the formation of body color, providing a basis for further analyzing the evolution and functional mechanism of the tyrosine protease gene family in Plectropomus leopardus.

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肖婕,王梦娅,吴绍轩,汪波,胡景杰,包振民.豹纹鳃棘鲈酪氨酸酶Tyr基因家族的结构特征及组织表达分析[J].中国水产科学,2022,29(5):653-664
XIAO Jie, WANG Mengya, WU Shaoxuan, WANG Bo, HU Jingjie, BAO Zhenmin. Bioinformatics and expression analysis of Tyrosinase protein family genes in leopard coral grouper[J]. Journal of Fishery Sciences of China,2022,29(5):653-664

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  • 在线发布日期: 2022-06-13
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