三角帆蚌微卫星富集文库的构建、鉴定及多态性分析
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1. 中国水产科学研究院 淡水渔业研究中心, 农业部淡水鱼类遗传育种和养殖生物学重点开放实验室, 江苏 无锡 214081; 2. 长江大学 动物科学学院, 湖北 荆州 434025; 3. 中国科学院 水生生物研究所, 湖北 武汉 430072

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许巧情(1676), 女, 副教授, 主要从事分子免疫学研究. E-mail: xuqiaoqing@163.com

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农业部淡水鱼类遗传育种和养殖生物学重点开放实验室开放基金资助项目(BZ2009-16); 湖北省教育厅科研基金资助项目(Q20081204)


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    was constructed according to the strong affinity between biotin and streptavidin. Total DNA was extracted using Wizard Genomic DNA Purification Kit (Promega), digested with restriction enzym I and then ligated to the adapters. The treated DNA sample was then pooled and fragments were separated on a 1.2 % agarose gel prior to size selection. The product fragments (2001 000 bp) were excised, purified and amplified with Mse I-N primers. The amplified DNA was hybridized with 5-biotinylated (CA)13-3 repeat oligos. The hybrid mixture was incubated with magnetic beads coated with streptavidin. The selected DNAs were then amplified using primers designed complementary to the linkers. Cleaned products were ligated into a pMD18-T vector (TaKaRa) and transformed into DH5a competent cells. Recombinant clones were detected by PCR amplification with I-N primers. A total of 100 clones with foreign inserts were sequenced. A total of 54 clones were screened for usable microsatellites. Of this clones, 33 were deemed unique, of sufficient length (more than 8 repeats) and possessed adequate flanking regions for primer designment. Among 33 primer pairs designed, 25 yielded scorable amplification products. separated on 10% denaturing polyacrylamide gel and visualized by silver staining, pBR322 marker was used as standard for scoring. These loci showed high levels of genetic polymorphism testing on 30 individuals sampled from Dongting Lake of Hunan Province, China. The observed number of alleles per locus ranged from 4 to 12. The ranges of observed and expected heterozygosity were 0.167 8 to 1.000 0 and 0.362 9 to 0.849 2, respectively and the average of polymorphic information content was 0.518 2. Two microsatellite loci were significantly deviated from Hardy–Weinberg equilibrium and no linkage disequilibrium was found. Construction microsatellite enriched library of triangle mussel according to the strong affinity between biotin and the streptavidin was successed. These microsatellite loci will be useful for assessment of genetic diversity and population structure in .

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许巧情,谢骏,张书环,赵朝阳,袁汉文.三角帆蚌微卫星富集文库的构建、鉴定及多态性分析[J].中国水产科学,2010,17(6):0-
.[J]. Journal of Fishery Sciences of China,2010,17(6):0-

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  • 在线发布日期: 2010-11-19
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