L.) are highly valued, both commercially and socially, throughout the world. The traits associated with economic value are primarily quantitatively controlled by polygenes. Thus, screening of the genes and markers that control quantitative traits has a significant practical value. We evaluated the association between microsatellite markers and body-shape traits such as body length, height, thickness, head length, genomic DNA of 192 low back common carp using fluorescent dye-labeled universal M13 primers. has the advantage of being simple, reliable, and allowing high-throughput microsatellite genotyping. This is particularly useful for research groups that perform high-throughput genetic linkage analysis with a high number of microsatellite markers., CAFS2321, andHLJE310 were associated with body height.CAFS2137, CAFS100, had a significant association with head length. CAFS1491, had a significant correlation to caudal peduncle length. and were significantly correlated to caudal peduncle height. Our results also suggest that some of the genotypes at each locus are positively correlated with body-shape traits. Genotype AA at locus were both positively correlated with body length traits, genotype AB at locus were positively correlated with body height traits. Conversely, genotype AB at locus and genotype AA at locus were negatively correlated with body length traits. The positively correlated genotypes at each locus represent molecular markers that can be used to assist breeding selection whereas negatively correlated genotypes should be eliminated through selection. Our results provide valuable insight into carp molecular marker assistant breeding selection.