白斑综合征病毒江苏分离株变异区和缺失区基因的序列比较
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江苏省淡水水产研究所, 江苏 南京 210017

作者简介:

薛晖(1968), 男, 高级工程师, 从事水产病害研究. E-mail:jsxuehui@163.com

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S94

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农业部公益性行业(农业)科研专项(201003070); 江苏省农业科技支撑计划项目 (BE2010378).


Comparative analysis of variable and deletion regions of white spot syndrome virus genome among isolates in Jiangsu Province
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Freshwater Fisheries Research Institute of Jiangsu Province, Nanjing 210017, China

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    摘要:

    中的感染流行情况和分子流行病学特征。在此基础上考虑地理和时间因素选取了兴化、盱眙等地的结果表明在江苏境内流行的兴化毒株与其余毒株间存在明显差异

    Abstract:

    () in Jiangsu Province, China. We collected 83 crayfish during the period between July 2008 and June 2010. Of these, 42 were tested positive for WSSV using the loop-mediated isothermal amplification method (LAMP). Based on geographical and time considerations, we selected six positive samples for amplification of the variable and deletion regions of the WSSV genome. In addition, we used PCR amplification to clone and sequence these regions. We then conducted a pairwise and multiple alignment analysis to evaluate the degree of genetic divergence between different strains. The variable region was ~1 440 bp in length in most strains, except in isolate WSSV-XH(1 829 bp). The deletion region was 384 bp in length in six strains, and there was complete homology among the nucleotide sequences. We compared the isolate sequences to those in GenBank and found at least two distinct types of WSSV in Jiangsu Province. Given this, we hypothesize that the WSSV variable region and the deletion region may have evolved independently.

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薛晖,王晓丰,丁正峰,唐建清.白斑综合征病毒江苏分离株变异区和缺失区基因的序列比较[J].中国水产科学,2011,18(5):1196-1201
XUE Hui, WANG Xiaofeng, DING Zhengfeng, TANG Jianqing. Comparative analysis of variable and deletion regions of white spot syndrome virus genome among isolates in Jiangsu Province[J]. Journal of Fishery Sciences of China,2011,18(5):1196-1201

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  • 在线发布日期: 2011-10-08
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