仿刺参性别相关基因P450c17的克隆与序列分析
DOI:
CSTR:
作者:
作者单位:

大连海洋大学 农业部北方海水增养殖重点实验室, 辽宁 大连 116023

作者简介:

田燚( (1979−), 女,副教授, 主要从事海洋生物学研究. E-mail: tianyi@dlou.edu.cn

通讯作者:

中图分类号:

基金项目:

国家自然科学基金项目(31072230, 41106128); 农业部科技成果转化资金项目(2010GB2B000080).


Cloning and bioinformatics analysis of aromatization gene P450c17 in sea cucumber Apostichopus japonicus (Selenka)
Author:
Affiliation:

Dalian Ocean University, Key Laboratory of Mariculture, Ministry of Agriculture, Dalian 116023, China

Fund Project:

  • 摘要
  • |
  • 图/表
  • |
  • 访问统计
  • |
  • 参考文献
  • |
  • 相似文献
  • |
  • 引证文献
  • |
  • 资源附件
  • |
  • 文章评论
    摘要:

    ()

    Abstract:

    We cloned and characterized a unique and highly compartmentalized sea cucumber aromatization gene, cDNA was 2 036 bp in length, and contained a 1 530 bp open reading frame (ORF), a 250 bp 3′UTR, and a 256 bp 5′UTR. Based on the effective length of gene translation, the full-length cDNA had ATTTA special sequences in the 3′ UTR and polyA regions. The full-length cDNA encoded 509 amino acids constituting a 57.6 kD protein molecule with an isoelectric point of 5.5. The precursor protein was hydrophilic. The protein sequence had one signal peptide, consisting of a 25 amino acid residue. The signal peptide consisted primarily of an alpha helix. The sequence of amino acids contained one transmembrane region, involving in electronic transfer catalysis between the internal and external membrane. We found a single N-glycosylation site, suggesting the precursor protein belonged to the family of secretion transmembrane glycoproteins. The secondary structure of the precursor protein consisted primarily of an alpha helix, with irregular coiling and a strand chain, but without β folding in the complete protein. Sequence comparison revealed that the similarity of theprecursor protein ranged from 35% to 41% with other aquatic animals. We conducted a phylogenetic analysis using the neighbor joining (NJ) method. The evolutionary tree indicated that the P450c17 precursor protein contained a P450 specific structutermed the , a four-helix bundle, helices J and K, and two sets of beta-sheets. These constitute the haem-binding loop (with an absolutely conserved cysteine that serves as the 5th ligand for the haem iron), the proton-transfer groove, and the absolutely conserved EXXR motif in helix K. Our results provide a reference for investigating the function of this; gene cloning; bioinformatics analysis

    参考文献
    相似文献
    引证文献
引用本文

田燚,张丙龙,常亚青.仿刺参性别相关基因P450c17的克隆与序列分析[J].中国水产科学,2012,19(1):22-32
TIAN Yi, ZHANG Binglong, CHANG Yaqing. Cloning and bioinformatics analysis of aromatization gene P450c17 in sea cucumber Apostichopus japonicus (Selenka)[J]. Journal of Fishery Sciences of China,2012,19(1):22-32

复制
分享
文章指标
  • 点击次数:
  • 下载次数:
  • HTML阅读次数:
  • 引用次数:
历史
  • 收稿日期:
  • 最后修改日期:
  • 录用日期:
  • 在线发布日期: 2012-02-01
  • 出版日期:
文章二维码