全同胞家系中生长差异翘嘴鳜肌肉转录组分析
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中山大学生命科学学院, 水生经济动物研究所, 广东省水生经济动物良种繁育重点实验室, 有害生物控制与资源利用国家重点实验室, 广东 广州 510006

作者简介:

曾爽(1992-),女,硕士研究生,主要从事翘嘴鳜生长研究.E-mail:jiexiazengshuang@163.com

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S917

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广东省海洋与渔业局项目(A201401A02);广东省科技厅科技计划项目(2014A020208022).


Muscle transcriptome of Siniperca chuatsi with different weights from a full-sib family
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College of Life Science, Sun Yat-sen University;Institute of Aquatic Economic Animals, Key Laboratory for Aquatic Economic Animals for Breeding and Reproduction, Guangdong Province;State Key Laboratory of Biocontrol, Guangzhou 510006, China

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    摘要:

    翘嘴鳜()是中国重要的经济水产养殖品种,对翘嘴鳜基因表达模式进行研究有助于筛选优势个体,培育生长特性优良的品种。为了解体重明显差异翘嘴鳜个体的差异基因表达信息,为翘嘴鳜培育提供基因指导,本研究从同一家系中挑选体重明显差异的3月龄翘嘴鳜()个体进行肌肉转录组测序,研究不同体型个体间基因表达模式差异。结果显示,来自同一家系的翘嘴鳜个体在相同养殖条件下仍出现明显体重差异,养殖3个月后,极大个体(overweight)平均体重可达到极小个体(underweight)的4倍。分别对极大个体和极小个体的肌肉组织进行转录组测序,共获得73353个非重复序列基因(unigenes),通过基因表达量比较共获得8942个差异基因,对差异表达基因进行定义发现,、Troponin等基因在极小个体中具有更高的表达水平。通过KEGG通路富集显示,蛋白质生成、蛋白质消化、RNA转运通路富集了大量差异表达基因。本研究发现体重差异明显的翘嘴鳜个体具有不同基因表达模式,转录组测序获得了大量差异表达基因信息,为翘嘴鳜生长研究提供了丰富的基因资源。

    Abstract:

    is an important species in the Chinese economic aquiculture industry. Therefore, it is imperative for us to study the growth regulatory mechanisms of to help improve the growth trait and cultivate new varieties with higher growth rates. To learn more about the molecular mechanisms behind the growth of , the muscle transcriptomes of fish with different weights were sequenced. Despite being cultivated under the same conditions, the from full-sib families showed differences in the growth traits. After three months, 5 overweight and 5 underweight individuals were selected. The weight of the overweight group was 4 times heavier than the that of the underweight group. Muscle transcriptome sequencing was conducted to determine the differences in the gene expression patterns between the overweight and underweight groups. In all, 73353 unigenes were obtained with an average size of 703 bp. Then, 39005 unigenes were annotated by searching against NR, COG, Swissprot, and KEGG. After RPKM comparison, 8942 differentially expressed genes (DEGs) were confirmed, which were mainly found in the underweight group. , and Troponin have a higher gene expression in the underweight group. According to the KEGG pathway, many different expression genes are enriched in pathways concerning protein processing in the endoplasmic reticulum, ubiquitin-mediated proteolysis, and RNA transport. The expression trends of genes relating to protein synthesis and muscle fiber synthesis appear to be consistent. In general, the study showed that with different growing characteristics have different transcriptome expression patterns. The underweight fish are smaller in size and present higher gene expression activities. This data provides rich genetic resources for studies on the growth regulation of .

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曾爽,刘宣歌,王鹏飞,胥鹏,曾雷,周磊,唐琴冬,陈挚,李桂峰.全同胞家系中生长差异翘嘴鳜肌肉转录组分析[J].中国水产科学,2020,27(1):53-61
ZENG Shuang, LIU Xuange, WANG Pengfei, XU Peng, ZENG Lei, ZHOU Lei, TANG Qindong, CHEN Zhi, LI Guifeng. Muscle transcriptome of Siniperca chuatsi with different weights from a full-sib family[J]. Journal of Fishery Sciences of China,2020,27(1):53-61

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  • 在线发布日期: 2020-01-09
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