基于vp19基因检测克氏原螯虾WSSV高灵敏度一步式PCR方法的建立
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1.华中农业大学水产学院/双水双绿研究院, 湖北 武汉 430070 ;2.湖北洪山实验室, 湖北 武汉 430070 ;3.农业农村部水生动物疫病专业实验室(华中农业大学), 湖北 武汉 430070 ;4.湖北省水生动物病害防控工程技术研究中心, 湖北 武汉 430070 ;5.长江经济带大宗水生生物产业绿色发展教育部工程研究中心, 湖北 武汉 430070

作者简介:

陈楠(1980-),男,讲师,博士,研究方向为克氏原螯虾病害防控.E-mail:chennan@mail.hzau.edu.cn

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国家重点研发计划项目(2022YFD2400700); 湖北省重点研发计划项目(2023BBB169); 湖北洪山实验室重大项目 (2021HSZD002); 湖北省农业科技创新中心项目(2024-620-000-001-33); 中央高校基本科研业务费专项基金项目 (2662023SCPY003, 20062023SCYJ004); 湖北省支持种业高质量资金项目(HBZY2023B009).


Establishment of a highly sensitive one-step PCR assay for detecting white spot syndrome virus (WSSV) in Procambarus clarkii based on the vp19 gene
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1.College of Fisheries, Shuangshui Shuanglu Institute, Huazhong Agricultural University, Wuhan 430070 , China ;2.Hubei Hongshan Laboratory, Wuhan 430070 , China ;3.National Aquatic Animal Diseases Para-reference Laboratory (Huazhong Agricultaral University), Wuhan 430070 ,China ;4.Hubei Engineering Technology Research Center for Aquatic Animal Diseases Control and Prevention, Wuhan 430070 ,China ;5.Engineering Research Center of Green development for Conventional Aquatic Biological Industry in the Yangtze RiverEconomic Belt, Ministry of Education, Wuhan 430070 , China

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    摘要:

    白斑综合征病毒(WSSV)是危害克氏原螯虾养殖的重要病原。本研究旨在针对该病毒早期检测和诊断速度慢、灵敏度不高、不便捷等问题, 建立新的 WSSV 一步式 PCR 检测方法。该方法基于 WSSV 主要囊膜蛋白 VP19 的基因保守序列设计引物, 建立方法并针对分析特异性、分析灵敏度、诊断特异性、诊断灵敏度开展了与 WOAH 巢式 PCR 方法的比较评估。结果表明, 本方法对 WSSV 具有高分析特异性, 仅在阳性样本中扩增出 196 bp 条带, 与传染性皮下和造血器官坏死病毒等其他常见水产病原无交叉反应。分析灵敏度测试显示, 以 WSSV 标准质粒为模板时, 本方法理论检出限低至 1.83 copies/μL; 以田间样品混合 DNA 为模板时, 最低检出限达 0.82 fg/μL, 均优于 WOAH 巢式 PCR 方法。同时, 本研究以 WOAH Taqman qPCR 方法为标准, 比较了本方法和巢式 PCR 对 317 份田间样品的检测结果, 本方法的诊断特异性为 97.01%, 诊断灵敏度为 95.08%, 均优于巢式 PCR。综上所述, 本研究建立的一步式 PCR 检测方法具有高特异性和高灵敏度的优点, 适用于克氏原螯虾 WSSV 周年监测和快速诊断, 能够为有效防控 WSSV 相关流行病提供重要的技术支持。

    Abstract:

    White spot syndrome virus (WSSV) poses a significant threat to red swamp crayfish (Procambarus clarkii) aquaculture, a major crustacean industry in China. This virus' ability to remain latent in hosts and its complex transmission pathways make prevention and early detection crucial. However, current diagnostic methods, including the WOAH-recommended nested PCR, have limitations in speed, sensitivity, and convenience. This study aimed to develop a rapid, sensitive, and specific one-step conventional PCR assay for WSSV detection in P. clarkii, addressing the need for improved surveillance and early intervention strategies. In our study, specific primers (V1) were designed to target a 196 bp region within the WSSV vp19 gene. The assay's analytical specificity was rigorously evaluated using DNA/cDNA from 10 different pathogens in crayfish (5 viruses and 5 bacteria). To determine analytical sensitivity, serial dilutions of a recombinant plasmid (pMD19T-V1) containing the vp19 target sequence were employed. WOAH recommended TaqMan qPCR was used as the reference method in performance parameters evaluation. The assay’s performances parameters including analytical specificity (ASp), analytical sensitivity (ASe), diagnostic specificity (DSp), diagnostic sensitivity (DSe), and positive rate between the one-step PCR and nested PCR were compared. Results showed that developed one-step PCR assay demonstrated high ASp for WSSV detection, no cross-reactivity was detected against other 9 common pathogen samples.ASe tests revealed impressive detection limits: using the WSSV standard plasmid as a template, the theoretical minimum detection limit was 1.83 copies/μL, while with mixed DNA from field samples, the limit reached 0.82 fg/μL. Notably, in both scenarios, this method outperformed the WOAH-recommended nested PCR in terms of sensitivity. Comparison of diagnostic performance on 317 field samples showed that the one-step PCR achieved a DSp of 97.01% and a DSe of 95.08%, both superior to the WOAH-recommended nested PCR. In conclusion, this study introduces an innovative one-step PCR method for WSSV detection in P. clarkii, based on the vp19 gene, achieving a remarkable detection limit of 1.83 copies/μL while maintaining simplicity and cost-effectiveness. Outperforming the WOAH-recommended nested PCR, this highly sensitive approach excels in identifying latent infections and facilitating epidemiological investigations. Its ability to detect low-level infections enhances its versatility for both routine screening and research, providing a powerful tool for year-round dynamic monitoring and early warning of WSSV. While acknowledging current limitations, this groundbreaking method lays a solid foundation for future advancements in aquatic pathogen detection. By combining accuracy, sensitivity, and practicality, this research represents a significant step forward in WSSV detection technology, with far-reaching implications for the sustainable development of crayfish aquaculture in both scientific and economic contexts.

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陈楠,罗小红,廖明聪,胡瑞雪,李丹,顾泽茂.基于vp19基因检测克氏原螯虾WSSV高灵敏度一步式PCR方法的建立[J].中国水产科学,2025,32(5):689-699
CHEN Nan, LUO Xiaohong, LIAO Mingcong, HU Ruixue, LI Dan, GU Zemao. Establishment of a highly sensitive one-step PCR assay for detecting white spot syndrome virus (WSSV) in Procambarus clarkii based on the vp19 gene[J]. Journal of Fishery Sciences of China,2025,32(5):689-699

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  • 收稿日期:2024-10-07
  • 最后修改日期:2025-03-18
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  • 在线发布日期: 2025-08-04
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