中国大鲵Sox19 基因全长cDNA 序列的克隆及组织表达分析
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四川农业大学 生命科学院, 四川 雅安 625014

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作者简介: 刘静(1987–), 女, 硕士研究生, 从事动物分子生物学研究. E-mail: liujingabcd123@163.com 通信作者: 王勤(1968–), 教授. E-mail: wangqin3269@163.com

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S917

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四川省科技厅应用基础项目(2011JY0103).


Cloning and tissue expression analysis of the full length cDNA encoding the Sox19 gene in Chinese giant salamander (Andrias davidianus)
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College of Life Sciences, Sichuan Agricultural University, Ya’an 625014, China

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    摘要:

    采用逆转录聚合酶链反应(RT-PCR)及cDNA 末端快速扩增(RACE)技术克隆了中国大鲵(Andrias davidianus)Sox19 基因全长cDNA 序列, 并进行各组织间的表达分析。中国大鲵Sox19 基因全长1290 bp, ORF 长858 bp, 编码285 个氨基酸, 位于39~109 位的HMG-box 是其主要功能区。氨基酸序列分析表明, 其与舌齿鲈(Dicentrarchuslabrax)、斑马鱼(Danio rerio)及红鳍东方鲀(Takifugu rubripes)的相似度分别为 64%、58%、55%。采用邻接法对不同物种的Sox19 编码区序列构建分子系统树发现: 中国大鲵Sox19 基因属于较早从鱼类分化出来的基因, 表明Sox19 基因从中国大鲵到鱼类的进化速度比较快。荧光定量PCR 结果显示, Sox19 在所有检测的组织中均有表达, 且在心脏中的表达量最高, 卵巢中次之, 肾脏中的表达量略高于肠道。中国大鲵Sox19 基因的发现打破了Sox19 基因一直被认为是鱼类所特有基因的观点, 填补了两栖类有关此基因的空白, 为更进一步的了解Sox19 基因在中国大鲵中的重要功能奠定了基础, 同时Sox19 基因还可作为研究中国大鲵早期胚胎神经系统发育情况的分子标记, 为其他两栖类动物的研究提供借鉴。

    Abstract:

    The Sox family of transcription factors is involved in a variety of developmental processes, including sexdetermination and gonadal differentiation. The high-mobility-group (HMG) domains of all Sox proteins have highlyconserved primary structures, and all appear to be capable of binding to the same target DNA sequence ofAACAA(A/T)G. The Sox gene family is divided into 10 subgroups (designated A–J) based on sequence similarity andgene organization. Sox19 is a member of the group B Sox genes, though it differs from other members in possessing anintron. The Sox B group is further divided into the B1 subgroup, which encodes transcriptional activators, and the B2subgroup, which encodes repressors. Based on sequence and phylogenetic analyses, Sox19 has been assigned to the B1subgroup. Interestingly, the Sox19 gene has always been considered fish specific but the full length cDNA encodingSox19 has only been cloned in Danio rerio, Takifugu rubripes, and Dicentrarchus labrax, and little is known about theexpression patterns in other species. In this study, we successfully cloned the full-length Sox19 cDNA sequence of theChinese giant salamander (Andrias davidianus), which is the largest extant amphibian, and used quantitative real-timepolymerase chain reaction (PCR) analysis to detect Sox19 gene expression in different tissues. We cloned a 1290-bpSox19 gene cDNA, including 270 bp of the 5′-untranslated region (UTR) sequence, 858 bp of the open reading frame(ORF), and 162 bp of the 3′-UTR sequence. The ORF encoded 285 amino acids, of which a 71 amino acid protein wasfrom the N-region and a 39–109 amino acid region was the highly conserved HMG-box. Bioinformatics software wasapplied to analyze the A. davidianus Sox19 protein, which is hydrophilic. A subcellular localization analysis showed that96% of the protein was present in the nucleus, possibly without the transmembrane region or signal peptide, 24.91%was in the α-helix, 3.16% was in the extended strand, 2.11% was in the β-corner, and 69.82% was in the random coil.The tertiary structural prediction revealed a α-helical structure as the functional site. The A. davidianus Sox19 proteinencoded 285 amino acids, which is less than that in fish. Therefore, fish have more similar “AAAA” polymers thanthose of the A. davidianus (150 amino acids), but A. davidianus has an additional “QNLV” at the C-terminal end, suggestingthat the Sox19 gene may have lost the lactamine oligomer during evolution and mutated to a more elaborate andcomplex transcriptional regulatory region. The amino acid sequence analysis revealed that the putative A. davidianus-Sox19 protein had 55%, 58%, and 64% identity with T. rubripes, D. rerio, and D. labrax, respectively. The phylogeneticanalysis further demonstrated that A. davidianus split off earlier based on the Sox19 gene data, revealing a more primitiveevolutionary status. The Sox19 gene could have evolved through ancient fish-specific duplication of Sox3, althoughSox19 is expressed in the developing lens and central nervous system. We analyzed Sox19 expression in the gonad,heart, kidney, and bowel of adult A. davidianus to confer the functions of the protein by fluorescence quantitative PCR.The results show the highest Sox19 gene expression level in the heart, suggesting that Sox19 helps maintain heart function.The high expression level in the gonads shows that Sox19 may be involved in gonadal development and differentiation.Sox19 was also expressed in the kidney and intestine, indicating that Sox19 plays a role maintaining kidney andbowel functions in A. davidianus. The Sox19 gene expression levels in A. davidianus were not the same as those in thefish species investigated. Our results provide insight into the role of the Sox19 gene in A. davidianus and further ourunderstanding of Sox19 gene expression in amphibians. The Sox19 gene could be the earliest molecular marker of embryogenesisin A. davidianus.

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刘静,何青,刘丽丽,李成磊,王勤.中国大鲵Sox19 基因全长cDNA 序列的克隆及组织表达分析[J].中国水产科学,2015,22(6):1142-1149
LIU Jing, HE Qing, LIU Lili, LI Chenglei, WANG Qin. Cloning and tissue expression analysis of the full length cDNA encoding the Sox19 gene in Chinese giant salamander (Andrias davidianus)[J]. Journal of Fishery Sciences of China,2015,22(6):1142-1149

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  • 在线发布日期: 2015-11-26
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